Cheap flights Manila (Ninoy Aquino) to Kota-Kinabalu

From

To

Depart

Return

Passengers

1 passenger, economy

Cheap flights Manila to Kota-Kinabalu

Compare prices, duration and stops

Filters

Stops

Direct only 1 stop

Price

60 $ 306 $ 306 $

Airlines

AirAsia Zest Airasia Sdn BHD CEBU Pacific Air Malaysia Airlines Royal Brunei Tigerair

AK 585

14:45

Manila, Ninoy Aquino (MNL)

Tue, 15 sep

9h 50min

1 stop

00:35

Kota-Kinabalu (BKI)

Wed, 16 sep +1

165 $

Z2 124

23:45

Manila, Ninoy Aquino (MNL)

Wed, 16 sep

14h 40min

1 stop

14:25

Kota-Kinabalu (BKI)

Thu, 17 sep +1

183 $

TR 591

11:40

Manila, Ninoy Aquino (MNL)

Tue, 22 sep

23h 50min

1 stop

11:30

Kota-Kinabalu (BKI)

Wed, 23 sep +1

164 $

Z2 501

15:10

Manila, Ninoy Aquino (MNL)

Wed, 23 sep

2h 10min

Direct

17:20

Kota-Kinabalu (BKI)

Wed, 23 sep

115 $

TR 591

11:40

Manila, Ninoy Aquino (MNL)

Thu, 24 sep

24h 5min

1 stop

11:45

Kota-Kinabalu (BKI)

Fri, 25 sep +1

244 $

BI 686

13:45

Manila, Ninoy Aquino (MNL)

Thu, 24 sep

10h 25min

1 stop

00:10

Kota-Kinabalu (BKI)

Fri, 25 sep +1

185 $

AK 585

14:45

Manila, Ninoy Aquino (MNL)

Thu, 24 sep

9h 50min

1 stop

00:35

Kota-Kinabalu (BKI)

Fri, 25 sep +1

179 $

Z2 501

15:10

Manila, Ninoy Aquino (MNL)

Fri, 25 sep

2h 10min

Direct

17:20

Kota-Kinabalu (BKI)

Fri, 25 sep

80 $

TR 591

11:40

Manila, Ninoy Aquino (MNL)

Sat, 26 sep

15h 35min

1 stop

03:15

Kota-Kinabalu (BKI)

Sun, 27 sep +1

237 $

Z2 501

15:10

Manila, Ninoy Aquino (MNL)

Sun, 27 sep

2h 10min

Direct

17:20

Kota-Kinabalu (BKI)

Sun, 27 sep

79 $

TR 591

11:40

Manila, Ninoy Aquino (MNL)

Mon, 28 sep

40h 45min

2 stops

04:25

Kota-Kinabalu (BKI)

Wed, 30 sep +1

130 $

Z2 501

15:10

Manila, Ninoy Aquino (MNL)

Mon, 28 sep

2h 10min

Direct

17:20

Kota-Kinabalu (BKI)

Mon, 28 sep

84 $

Z2 501

15:10

Manila, Ninoy Aquino (MNL)

Wed, 30 sep

2h 10min

Direct

17:20

Kota-Kinabalu (BKI)

Wed, 30 sep

76 $

BI 686

13:45

Manila, Ninoy Aquino (MNL)

Thu, 1 oct

22h 25min

1 stop

12:10

Kota-Kinabalu (BKI)

Fri, 2 oct +1

188 $

Z2 501

15:10

Manila, Ninoy Aquino (MNL)

Fri, 2 oct

2h 10min

Direct

17:20

Kota-Kinabalu (BKI)

Fri, 2 oct

74 $

MH 709

22:50

Manila, Ninoy Aquino (MNL)

Fri, 2 oct

11h 30min

1 stop

10:20

Kota-Kinabalu (BKI)

Sat, 3 oct +1

175 $

TR 591

11:40

Manila, Ninoy Aquino (MNL)

Sat, 3 oct

15h 35min

1 stop

03:15

Kota-Kinabalu (BKI)

Sun, 4 oct +1

157 $

Z2 501

15:10

Manila, Ninoy Aquino (MNL)

Sun, 4 oct

2h 10min

Direct

17:20

Kota-Kinabalu (BKI)

Sun, 4 oct

77 $

Z2 501

15:10

Manila, Ninoy Aquino (MNL)

Mon, 5 oct

2h 10min

Direct

17:20

Kota-Kinabalu (BKI)

Mon, 5 oct

75 $

Z2 501 🔥 Hot deal

15:10

Manila, Ninoy Aquino (MNL)

Sun, 11 oct

2h 10min

Direct

17:20

Kota-Kinabalu (BKI)

Sun, 11 oct

74 $

Z2 501

15:10

Manila, Ninoy Aquino (MNL)

Fri, 23 oct

2h 10min

Direct

17:20

Kota-Kinabalu (BKI)

Fri, 23 oct

76 $

TR 591

11:30

Manila, Ninoy Aquino (MNL)

Thu, 29 oct

23h 30min

1 stop

11:00

Kota-Kinabalu (BKI)

Fri, 30 oct +1

133 $

Z2 501

08:15

Manila, Ninoy Aquino (MNL)

Mon, 2 nov

2h 5min

Direct

10:20

Kota-Kinabalu (BKI)

Mon, 2 nov

79 $

Z2 501 🔥 Hot deal

08:15

Manila, Ninoy Aquino (MNL)

Wed, 11 nov

2h 5min

Direct

10:20

Kota-Kinabalu (BKI)

Wed, 11 nov

75 $

5J 501

12:00

Manila, Ninoy Aquino (MNL)

Thu, 12 nov

15h 10min

1 stop

03:10

Kota-Kinabalu (BKI)

Fri, 13 nov +1

159 $

Z2 501

08:15

Manila, Ninoy Aquino (MNL)

Wed, 25 nov

2h 5min

Direct

10:20

Kota-Kinabalu (BKI)

Wed, 25 nov

79 $

TR 589

22:30

Manila, Ninoy Aquino (MNL)

Wed, 2 dec

26h 55min

2 stops

01:25

Kota-Kinabalu (BKI)

Fri, 4 dec +1

154 $

BI 686

13:40

Manila, Ninoy Aquino (MNL)

Thu, 10 dec

10h 25min

1 stop

00:05

Kota-Kinabalu (BKI)

Fri, 11 dec +1

193 $

Z2 501

08:15

Manila, Ninoy Aquino (MNL)

Sun, 20 dec

2h 5min

Direct

10:20

Kota-Kinabalu (BKI)

Sun, 20 dec

96 $

Z2 501

08:15

Manila, Ninoy Aquino (MNL)

Mon, 21 dec

2h 5min

Direct

10:20

Kota-Kinabalu (BKI)

Mon, 21 dec

95 $

TR 591

11:30

Manila, Ninoy Aquino (MNL)

Tue, 22 dec

15h 40min

1 stop

03:10

Kota-Kinabalu (BKI)

Wed, 23 dec +1

306 $

Z2 501

08:15

Manila, Ninoy Aquino (MNL)

Wed, 23 dec

2h 5min

Direct

10:20

Kota-Kinabalu (BKI)

Wed, 23 dec

94 $

TR 591

11:30

Manila, Ninoy Aquino (MNL)

Thu, 24 dec

15h 40min

1 stop

03:10

Kota-Kinabalu (BKI)

Fri, 25 dec +1

259 $

Z2 501

08:15

Manila, Ninoy Aquino (MNL)

Fri, 25 dec

2h 5min

Direct

10:20

Kota-Kinabalu (BKI)

Fri, 25 dec

94 $

BI 684

07:15

Manila, Ninoy Aquino (MNL)

Sat, 26 dec

3h 50min

1 stop

11:05

Kota-Kinabalu (BKI)

Sat, 26 dec

280 $

Z2 501

08:15

Manila, Ninoy Aquino (MNL)

Sun, 27 dec

2h 5min

Direct

10:20

Kota-Kinabalu (BKI)

Sun, 27 dec

104 $

Z2 501

08:15

Manila, Ninoy Aquino (MNL)

Mon, 28 dec

2h 5min

Direct

10:20

Kota-Kinabalu (BKI)

Mon, 28 dec

104 $

TR 591

11:30

Manila, Ninoy Aquino (MNL)

Tue, 29 dec

15h 40min

1 stop

03:10

Kota-Kinabalu (BKI)

Wed, 30 dec +1

303 $

BI 684

07:15

Manila, Ninoy Aquino (MNL)

Sat, 2 jan

3h 50min

1 stop

11:05

Kota-Kinabalu (BKI)

Sat, 2 jan

254 $

Z2 501

08:15

Manila, Ninoy Aquino (MNL)

Sun, 3 jan

2h 5min

Direct

10:20

Kota-Kinabalu (BKI)

Sun, 3 jan

120 $

Z2 501

08:15

Manila, Ninoy Aquino (MNL)

Wed, 6 jan

2h 5min

Direct

10:20

Kota-Kinabalu (BKI)

Wed, 6 jan

85 $

Z2 501

08:15

Manila, Ninoy Aquino (MNL)

Fri, 8 jan

2h 5min

Direct

10:20

Kota-Kinabalu (BKI)

Fri, 8 jan

80 $

Z2 501 🔥 Hot deal

08:15

Manila, Ninoy Aquino (MNL)

Sun, 10 jan

2h 5min

Direct

10:20

Kota-Kinabalu (BKI)

Sun, 10 jan

73 $

Z2 501

08:15

Manila, Ninoy Aquino (MNL)

Mon, 11 jan

2h 5min

Direct

10:20

Kota-Kinabalu (BKI)

Mon, 11 jan

80 $

5J 501

12:00

Manila, Ninoy Aquino (MNL)

Tue, 12 jan

27h 40min

1 stop

15:40

Kota-Kinabalu (BKI)

Wed, 13 jan +1

194 $

5J 501

12:05

Manila, Ninoy Aquino (MNL)

Tue, 12 jan

13h 25min

1 stop

01:30

Kota-Kinabalu (BKI)

Wed, 13 jan +1

174 $

Z2 501

08:15

Manila, Ninoy Aquino (MNL)

Wed, 13 jan

2h 5min

Direct

10:20

Kota-Kinabalu (BKI)

Wed, 13 jan

79 $

AK 585

17:10

Manila, Ninoy Aquino (MNL)

Wed, 13 jan

20h 30min

1 stop

13:40

Kota-Kinabalu (BKI)

Thu, 14 jan +1

148 $

Z2 501 Best price

08:15

Manila, Ninoy Aquino (MNL)

Fri, 15 jan

2h 5min

Direct

10:20

Kota-Kinabalu (BKI)

Fri, 15 jan

60 $

AK 585

17:10

Manila, Ninoy Aquino (MNL)

Fri, 15 jan

20h 30min

1 stop

13:40

Kota-Kinabalu (BKI)

Sat, 16 jan +1

145 $

Low price calendar

September 2026

Price chart (September 2026)

min: 74 $ · max: 244 $

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Good deal

74 $

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165 $

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183 $

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Good deal

76 $

Cheap flights Manila to Kota-Kinabalu

AirAsia Zest

Mon, Wed, Fri, Sun

Price from

$60

Tigerair

Mon, Tue, Wed, Thu, Fri, Sat

Price from

$130

Airasia Sdn BHD

Tue, Wed, Thu, Fri

Price from

$145

CEBU Pacific Air

Tue, Thu

Price from

$174

Malaysia Airlines

Fri

Price from

$175

Royal Brunei

Thu, Sat

Price from

$188

Popular destinations from Manila

All →

MNL

Manila — Kalibo

Philippines → Philippines

KLO

from

$17

MNL

Manila — Cebu City

Philippines → Philippines

CEB

from

$17

MNL

Manila — Puerto Princesa

Philippines → Philippines

PPS

from

$18

MNL

Manila — Davao City

Philippines → Philippines

DVO

from

$21

MNL

Manila — Iloilo

Philippines → Philippines

ILO

from

$22

MNL

Manila — Tagbilaran

Philippines → Philippines

TAG

from

$22

MNL

Manila — Caticlan

Philippines → Philippines

MPH

from

$22

MNL

Manila — Bacolod

Philippines → Philippines

BCD

from

$22

MNL

Manila — Tacloban

Philippines → Philippines

TAC

from

$22

Popular destinations to Kota-Kinabalu

All →

SDK

Sandakan — Kota-Kinabalu

Malaysia → Malaysia

BKI

from

$22

KUL

Kuala Lumpur — Kota-Kinabalu

Malaysia → Malaysia

BKI

from

$26

TWU

Tawau — Kota-Kinabalu

Malaysia → Malaysia

BKI

from

$27

MYY

Miri — Kota-Kinabalu

Malaysia → Malaysia

BKI

from

$27

KCH

Kuching — Kota-Kinabalu

Malaysia → Malaysia

BKI

from

$44

PEN

Penang — Kota-Kinabalu

Malaysia → Malaysia

BKI

from

$46

LBU

Labuan — Kota-Kinabalu

Malaysia → Malaysia

BKI

from

$47

JHB

Johor Bahru — Kota-Kinabalu

Malaysia → Malaysia

BKI

from

$51

Cheap flights Manila to Kota-Kinabalu

Interesting facts about the route

Flight time

2h 10min

Distance

1 097 km

Average price

$104

Most frequent flight

Z2 501

Passenger reviews

No reviews for this route yet

Internet abroad

eSIM · Malaysia

sambungkan

5 GB

data

30

days

$12

sambungkan

10 GB

data

30

days

$20

sambungkan

20 GB

data

30

days

$32

sambungkan

data

10

days

$35

sambungkan

1 GB

data

7

days

$5

Frequently Asked Questions

The average ticket price Manila Kota-Kinabalu is $104. The cheapest ticket costs $165, operated by Airasia Sdn BHD, flight 585, departing Manila on 15 September at 14:45, arriving Kota-Kinabalu on 16 September at 00:35.

The average flight time is 14 hours 40 minutes. The fastest flight takes 9 hours 50 minutes, flight 585 operated by Airasia Sdn BHD, departing Manila on 15 September at 14:45, arriving Kota-Kinabalu on 16 September at 00:35.

Flights on the Manila - Kota-Kinabalu route are operated by the following airlines: Cebu Pacific, Airasia Sdn BHD, Royal Brunei, Malaysia Airlines, Tigerair, AirAsia Zest.

The distance from Manila to Kota-Kinabalu is 1097 km.